A Differential Expression Analysis Toolkit for Visual Analytics and Data Aggregation

Differential expression analysis tools for data aggregation, visualization, exploratory analysis, and project organization.


News

DEvis 1.0.1 - December 7, 2018

  • Added LFC filtering parameter to de_counts().
  • Fixed a bug where MDS_hulls() used only union based aggregation when setting DEOnly=TRUE, regardless of aggregation method.
  • Fixed a bug in MDS_hulls() where exclusion of specified data didn't work with certain metadata column name formats.
  • Changed vignette to HTML format to prevent issues with LaTeX output rendering.

October 17, 2018

DEvis is now available through the CRAN repository.

DEvis 1.0.0

Initial release.

Reference manual

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install.packages("DEVis")

1.0.1 by Adam Price, 10 months ago


Browse source code at https://github.com/cran/DEVis


Authors: Adam Price


Documentation:   PDF Manual  


LGPL license


Imports ggplot2, pheatmap, RColorBrewer, ggthemes, MASS, plyr, ggsci, SummarizedExperiment, methods, ggdendro, PoiClaClu, reshape2, grDevices, stats, utils, gridExtra

Depends on DESeq2

Suggests knitr, rmarkdown, kableExtra


See at CRAN